DisGeNET - a database of gene-disease associations

List of associated variants

Glioma, C0017638

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs3025039	VEGFA	0.576	0.720	6	43784799	3 prime UTR variant	C/T	snv		0.13	62
rs833061	VEGFA	0.605	0.600	6	43769749	upstream gene variant	C/G;T	snv			42
rs3024994	VEGFA	0.776	0.120	6	43775770	non coding transcript exon variant	C/T	snv		3.8E-02	8
rs1005230	VEGFA	0.827	0.040	6	43768759	upstream gene variant	T/C	snv		0.60	5
rs3025030	VEGFA	0.882	0.200	6	43782850	non coding transcript exon variant	G/C	snv		0.13	3
rs1059394	TYMS ; ENOSF1	0.925	0.080	18	672792	3 prime UTR variant	C/T	snv		0.40	2
rs2847153	TYMS	0.925	0.080	18	661647	intron variant	G/A	snv		0.22	3
rs17748	TREH ; PHLDB1	0.827	0.080	11	118657714	3 prime UTR variant	C/T	snv		0.18	5
rs12723208	TRAF5	1.000	0.040	1	211337552	intron variant	A/G	snv		0.13	2
rs1042522	TP53	0.426	0.800	17	7676154	missense variant	G/C;T	snv	0.67		242
rs1131691014	TP53	0.439	0.800	17	7676154	frameshift variant	-/C	ins			214
rs878854066	TP53	0.439	0.800	17	7676153	missense variant	GG/AC	mnv			213
rs55819519	TP53	0.627	0.400	17	7673751	missense variant	C/A;G;T	snv	1.6E-04	1.3E-04	40
rs28934575	TP53	0.641	0.400	17	7674230	missense variant	C/A;G;T	snv			37
rs78378222	TP53	0.662	0.360	17	7668434	3 prime UTR variant	T/G	snv		8.3E-03	37
rs121912660	TP53	0.683	0.240	17	7673781	missense variant	C/A;G;T	snv			26
rs1800371	TP53	0.742	0.240	17	7676230	missense variant	G/A;T	snv	1.2E-03		15
rs1625895	TP53	0.752	0.200	17	7674797	non coding transcript exon variant	T/A;C;G	snv	9.1E-06; 0.86; 4.5E-06		13
rs35850753	TP53	0.807	0.080	17	7675353	5 prime UTR variant	C/T	snv		1.3E-02	8
rs1642785	TP53	0.807	0.200	17	7676483	5 prime UTR variant	G/A;C;T	snv	1.2E-05; 0.67; 2.8E-05		6
rs1053667	TOGARAM1	0.925	0.120	14	45073835	3 prime UTR variant	T/C	snv		0.11	4
rs781754593	TNFRSF1B	1.000	0.040	1	12202039	missense variant	A/G	snv	4.2E-06		1
rs2075685	TMEM167A ; XRCC4	0.724	0.320	5	83076846	intron variant	G/A;T	snv			14
rs3749474	TMEM165 ; CLOCK	0.724	0.320	4	55434518	3 prime UTR variant	C/T	snv		0.33	17
rs11943456	TMEM165	0.708	0.320	4	55410167	intron variant	T/C	snv		0.42	18